Search Results - rick+kim

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OpenCRAVAT, An Open Source Collaborative Platform for the Annotation of Human Genetic Variation

Unmet NeedGene variants are complex to interpret, involving different published methods, databases, algorithms for ranking genes and different prediction tools. Decision support frameworks were created to integrate these various resources into one environment. However, current frameworks are limited by a closed proprietary architecture, limiting its...

Published: 6/28/2024 | Inventor(s): Rachel Karchin, Kymberleigh Pagel, Michael Ryan, Rick Kim, Kyle Moad

Keywords(s): Computer and Network Systems, Computer Software, Database Management Software

Category(s): Technology Classifications > Computers, Electronics & Software > Databases, Technology Classifications > Computers, Electronics & Software > Algorithms, Clinical and Disease Specializations > Genetic Diseases, Clinical and Disease Specializations > Oncology

SNVBox – UPDATE

Unmet Need In the new “post-genome” era of personalized medicine, many variants critical to disease susceptibilities and drug sensitivities will be identified and increased numbers of people will undergo genetic testing. The Karchin group is developing algorithms and tools to facilitate this process. These models are being applied to cancer genomics,...

Published: 6/27/2024 | Inventor(s): Rachel Karchin, Michael Ryan, Mark Diekhans, Hannah Carter, Christopher Douville, Rick Kim

Keywords(s): Computer and Network Systems, Computer Software, Computer Systems Based on Biological Models, Computer Systems Based on Specific Computational Models, Computer Systems Utilizing Knowledge Based Models, Computing; Calculating; Counting, Data Processing Systems or Methods, Specifically Adapted fo~, Data Processing Systems or Methods, Specifically Adapted for, Electrical Digital Data Processing, Physics

Category(s): Technology Classifications > Computers, Electronics & Software, Technology Classifications > Computers, Electronics & Software > Financial Tech, Technology Classifications > Computers, Electronics & Software > Healthcare IT, Technology Classifications > Computers, Electronics & Software > Algorithms

Mutation Position Imaging Toolbox (muPIT) Interactive: Webserver for mapping variant positions to annotated, interactive 3D structures

C12199: Mutation Position Imaging Toolbox (muPIT) InteractiveNovelty: The current invention is a browser-based application for single nucleotide variants and mutations, designed to map genomic positions onto 3D protein structures.Value Proposition: The vast amount of available sequencing data is evidence that the limiting factor of research is shifting...

Published: 6/27/2024 | Inventor(s): Rick Kim, Mark Diekhans, Michael Ryan, Rachel Karchin, Dewey Kim

Keywords(s): Computational Modeling Tool, Computer Systems Based on Biological Models, Computer Systems Based on Specific Computational Models, Computing; Calculating; Counting, Discovery/Research Tools, Electrical Digital Data Processing, In Silico Research Tool, Nanoscale Modeling, Physics

Category(s): Technology Classifications > Computers, Electronics & Software > Healthcare IT, Technology Classifications > Computers, Electronics & Software, Technology Classifications > Research Tools